2023
47. Byungju Kim, Jincheol Seol, Yoon Ki Kim & Jong-Bong Lee* “Single-molecule visualization of mRNA circularization during translation” Exp Mol Med. https://doi.org/10.1038/s12276-023-00933-1 (2023)
2022
46. B.M. Britton, J.A. London, J.Martin-Lopez, N.D. Jones, J. Liu, Jong-Bong Lee, R. Fishel* “Exploiting the Distinctive Properties the Bacterial and Human MutS Homolog Sliding Clamps on Mismatched DNA“, Journal of Biological Chemistry, doi.org/10.1016/j.jbc.2022.102505 (2022)
45. Byungju Kim#, Y. Park#, H.J. Hwang, J. Chang, Y.K. Kim*, Jong-Bong Lee* “Single polysome analysis of mRNP” Biochemical and Biophysical Research Communications, doi.org/10.1016/j.bbrc.2022.06.017 (2022)
44. Minhyeok Chang#, O-c Lee#, Gayun Bu#, Jaeho Oh, N.-O. Yunn, S. H. Ryu, H.-B. Kwon, A.B. Kolomeisky, S.-H. Shim, J. Doh, J.-H. Jeon*, Jong-Bong Lee* “Formation of cellular close-ended tunneling nanotubes through mechanical deformation” Science Advances 8, eabj3995 (2022)
2021
43. S. Gu, H.-M. Jeon, S.W. Nam, K.Y. Hong, M.S. Rahman, Jong-Bong Lee, Y. Kim, S.K. Jang* “The flip-flop configuration of the PABP-dimer leads to switching of the translation function” Nucleic Acids Research doi.org/10.1093/nar/gkab1205 (2021)
42. J. Chang, H.J. Hwang, Byungju Kim, Y.-G. Choi, J. Park, Y. Park, B.S. Lee, H. Park, M.J. Yoon, J.-S. Woo, C. Kim, M.-S. Park, Jong-Bong Lee, Y.K. Kim* “TRIM28 functions as a negative regulator of aggresome formation” Autophagy doi.org/10.1080/15548627.2021.1909835 (2021)
41. J.A. London#, J. Martin-Lopez#, Inho Yang#, J. Liu, Jong-Bong Lee*, R. Fishel* “Linker domain function predicts pathogenic MLH1 missense variants” Proc. Natl. Acad. Sci. USA 118(9), e2019215118 (2021)
2020
40. Y. Park#, J. Park#, H.J. Hwang#, Byungju Kim#, K. Jeong, J. Chang, Jong-Bong Lee*, Y.K. Kim* “Nonsense-mediated mRNA decay factor UPF1 promotes aggresome formation” Nature Communications 11, 3106 (2020)
2019
39. J. Liu#, Ryanggeun Lee#, B. M. Britton#, J.A. London, Keunsang Yang, J. Hanne, Jong-Bong Lee*, R. Fishel* “MutL sliding clamps coordinate exonuclease-independent Escherichia coli mismatch repair” Nature Communications 10, 5294 (2019)
38. Ryanggeun Lee#, Keunsang Yang#, Jong-Bong Lee*, “Multiplexed single-molecule flow-stretching bead assay for DNA enzymology” BMB Reports 52, 589 (2019)
37. Ryanggeun Lee, Yongmoon Jeon, Jong-Bong Lee*, “Single-molecule DNA flow-stretching force spectroscopy with higher resolution using dark-field microscopy” Journal of the Korean Physical Society 75, 350 (2019)
36. Daehyung Kim, F. Rashid, Yeonmo Cho, M.S. Zaher, I.H. Cho, S.M. Hamdan, C. Jeong*, Jong-Bong Lee*, “DNA skybridge: 3D structure producing a light sheet for high-throughput single-molecule imaging” Nucleic Acids Research 47, e107 (2019)
2018
35. J. Hanne, B.M. Britton BM, Jonghyun Park, J. Liu, J. Martin-Lopez, N. Jones, M. Schoffner, P. Klajner, R. Bundschuh*, Jong-Bong Lee*, R. Fishel*, ”MutS homolog sliding clamps shield the DNA from binding proteins” Journal of Biological Chemistry 293, 14285 (2018)
34. J. Liu, Jong-Bong Lee*, R. Fishel* “Stochastic Processes and Component Placticity Governing DNA Mismatch Repair” Journal of Molecular Biology 430, 4456 (2018)
33. Daehyung Kim, R. Fishel* and Jong-Bong Lee*, “Coordinating Multi-Protein Mismatch Repair by Managing Diffusion Mechanics on the DNA” Journal of Molecular Biology 439, 4469 (2018)
32. Jonghyun Park#, S. Jergic#, Yongmoon Jeon, Won-Ki Cho, Ryanggeun Lee, N. E. Dixon* and Jong-Bong Lee*, “Dynamics of Proofreading by the E. coli Pol III Replicase” Cell Chemical Biology 25, 57 (2018)
2017
31. Minhyeok Chang, Jungsic Oh, Y. Kim, S. Hohng, and Jong-Bong Lee*, “Extended depth of field for single biomolecule optical imaging-force spectroscopy” Optics Express 25, 32189 (2017)
* “Spotlight Summary”, Highlighted Articles from OSA journals
* “Methods in Brief”, Nature Methods
30. S. Jung, J. Park, J. Bang, J.-Y. Kim, C. Kim, Yongmoon Jeon, Seung Hwan Lee, H. Jin, S. Choi, B. Kim, W.J. Lee, C.-G. Pack, Jong-Bong Lee, N.K. Lee, S. Kim* “Light-Induced Fluorescence Modulation of Quantum Dot-Crystal Violet Conjugates: Stochastic Off–On–Off Cycles for Multicolor Patterning and Super-Resolution” Journal of the American Chemical Society(JACS) 139, 7603 (2017)
29. Ka Young Hong, Seung Hwan Lee, Sohyun Gu, E. Kim, S. An, J. Kwon, Jong-Bong Lee*, S.K. Jang* “The bent conformation of poly(A)-binding protein induced by RNA-binding is required for its translational activation function” RNA Biology 14, 370 (2017)
2016
28. J. Liu#, J. Hanne#, B.M. Britton, J. Bennett, Daehyung Kim, Jong-Bong Lee*, R. Fishel*, “Cascading MutS and MutL sliding clamps control DNA diffusion to activate mismatch repair” Nature 539, 583 (2016)
* “DNA repair: Clamping down on copy errors“, News and Views by N.M. Kad & B. Van Houten
* “2016 국내 바이오 성과·뉴스 Top 5’s”
27. N.D. Jones, M.A. Lopez, J. Hanne, M.B. Peake, Jong-Bong Lee, R. Fishel*, K.E. Yoder* ” Retroviral intasomes search for a target DNA by 1D diffusion which rarely results in integration” Nature Communications 7, 11409 (2016)
26. K.L. Kim, Daehyung Kim, Seongsil Lee, S.-J. Kim, J.E. Noh, J.-H. Kim, Y.C. Chae, Jong-Bong Lee, S.H. Ryu*, “Pairwise detection of site-specific receptor phosphorylations using single-molecule blotting” Nature Communications 7, 11107 (2016)
25. Yongmoon Jeon, Daehyung Kim, J.V. Martín-López, Ryanggeun Lee, Jungsic Oh, J. Hanne, R. Fishel* and Jong-Bong Lee*, “Dynamic control of strand excision during human DNA mismatch repair” Proc. Natl. Acad. Sci. USA 113, 3281 (2016)
* “The Devil is in the details for DNA mismatch repair“, Commentary
24. R. Fishel and Jong-Bong Lee “Mismatch Repair” DNA Replication, Recombination and Repair: Molecular Mechanisms and Pathology (Hanaoka and Sugasawa, Ed.) Springer, NY (2016) {Book Chapter}
2015
23. J. Liu, J. Hanne, B.M. Britton, M. Shoffner, A.E. Albers, J. Bennett, R. Zatezalo, R. Barfield, D. Rabuka, Jong-Bong Lee, R. Fishel*, “An Efficient Site-Specific Method for Irreversible Covalent Labeling of Proteins with a Fluorophore” Scientific Reports 5, 16883 (2015)
22. G. Senavirathne#, J. Liu#, M. A Lopez Jr, J. Hanne, J. Martin-Lopez, Jong-Bong Lee, K. E Yoder, R. Fishel* “Widespread nuclease contamination in commonly used oxygen-scavenging systems” Nature Methods 12, 901 (2015)
21. D.-H. Kim, K. Zhou, D.-K. Kim, S. Park, J. Noh, Y. Kwon, D. Kim, N. W. Song, Jong-Bong Lee, P.-G. Suh, N. K. Lee*, S. H. Ryu,* “Analysis of Interactions between the Epidermal Growth Factor Receptor and Soluble Ligands on the Basis of Single-Molecule Diffusivity in the Membrane of Living Cells” Angewandte Chemie-Int. Edit. 54, 7028 (2015)
2014
20. Won-Ki Cho, S. Jergic, Daehyung Kim, N.E. Dixon, Jong–Bong Lee* “Loading Dynamics of a Sliding DNA Clamp” Angewandte Chemie-Int. Edit. 53, 6768 (2014)
19. G.H. Kwon, A. Jo, K. Baek, K.S. Jin, Y. Fu, Jong–Bong Lee, Y. Kim, Y. Cho* “Crystal structures of the structure-selective nuclease Mus81-Eme1 bound to flap DNA substrates” The EMBO J 33, 1061 (2014)
18. Minhyeok Chang#, Mijin Kwon#, Sooran Kim#, N.-O. Yuun#, Daehyung Kim, S.H. Ryu*, Jong–Bong Lee* “Aptamer-based Single-molecule Imaging of Insulin Receptors in Living Cells” J. Biomed. Opt. 19, 051204 (2014)
17. Jong–Bong Lee*, Won Ki Cho, Jonghyun Park, Yongmoon Jeon, Daehyung Kim, Seung Hwan Lee, R. Fishel* “Single-molecule Studies of MutS on Mismatched DNA” DNA Repair. 20, 82 (2014) {Invited Review}
16. Seung Hwan Lee, Jungsic Oh, Jonghyun Park, K.Y. Paek, S. Rho, S.K. Jang*, Jong–Bong Lee* “Poly(A) RNA and Paip2 Act as Allosteric Regulators of Poly(A)-Binding Protein” Nucleic Acids Res. 42, 2697 (2014)
2013
15. J. Hanne, J. Liu, Jong–Bong Lee*, R. Fishel* “Single-molecule FRET Studies on DNA Mismatch Repair” Internatl. J. Biophys. 3, 18 (2013) {Invited Review}
14. Y. Lee, S. H. Kwon, Y. Kim, Jong–Bong Lee, J. W. Park* “Mapping of Surface-Immobilized DNA with Force-Based Atomic Force Microscopy” Anal. Chem. 85, 4045 (2013)
2012
13. Seongsil Lee, Jungsic Oh, D. Kim, S. Kim, Jong–Bong Lee*, H.G. Nam* “Polarization-controlled Photoswitching Resolves Dipole Orientations with Subwavelength Resolution” Phys. Rev. Lett. 109, 248101 (2012)
* Silver prize in the 19th Samsung HumanTech Paper Competition
12. J. Park, D. Nam, Y. Kohmura, M. Nagasono, Yongmoon Jeon, Jong–Bong Lee, T. Ishikawa, C. Song* “Assessment of radiation damage in single-shot coherent diffraction of DNA molecules by an extreme-ultraviolet free-electron laser” Phys. Rev. E, 86, 042901 (2012)
11. Won–Ki Cho#, Cherlhyun Jeong#, Daehyung Kim, Minhyoek Chang K.–M. Song, J. Hanne, C. Ban, R. Fishel*, Jong–Bong Lee*, “ATP alters the Diffusion Mechanics of MutS on Mismatched DNA” Structure, 20, 1264 (2012)
* Highlighted as a featured article (Vol. 20 Issue 7: July 3, 2012)
* “Spotting the Mistakes, One Molecule at a time”, preview comment by A. Quessada-Vial & A.M. van Oijen
2011
10. Cherlhyun Jeong#, Won–Ki Cho#, K.–M. Song, C. Cook, T.–Y. Yoon, C. Ban*, R. Fishel*, Jong–Bong Lee*, “MutS Switches Between Two Fundamentally Distinct Clamps during Mismatch Repair.” Nat. Struct. Mol. Biol. 18, 379 (2011)
* “2011 국내 바이오 성과·뉴스 Top 5’s”
9. B. Chon, J. Bang, J. Park, Cherlhyun Jeong, J. H. Choi, Jong–Bong Lee, T. Joo, S. Kim*, “Unique Temperature Dependence and Blinking Behavior of CdTe/CdSe (Core/Shell) Type-II Quantum Dots.” J. Phys. Chem. C 115, 436 (2011)
2010
8. Jonghyun Park, Yongmoon Jeon, Daekil In, R. Fishel*, C. Ban*, Jong–Bong Lee*, “Single-Molecule Analysis Reveals the Kinetics and Physiological Relevance of MutL-ssDNA Binding.” PLoS ONE 5(11), e15496 (2010)
~2007
7. S. M. Hamdan, D.E. Johnson, N. A. Tanner, Jong–Bong Lee, U. Qimron, S. Tabor, A.M. van Oijen, C.C. Richardson, “Dynamic DNA Helicase-DNA Polymerase Interactions Assure Processive Replication Fork Movement.” Mol Cell 27, 539 (2007)
6. R. A. Pelcovits, R. B. Meyer, Jong-Bong Lee, “Dynamics of the molecular orientation field coupled to ions in two dimensional ferroelectric liquid crystals.” Phys. Rev. E 76, 021704 (2007)
5. Jong-Bong Lee, R. A. Pelcovits, R. B. Meyer, “Role of electrostatic influence on the texture of islands in free standing ferroelectric liquid crystal films.” Phys. Rev. E 75, 051701 (2007)
4. Jong–Bong Lee, R.K. Hite, S.M. Hamdan, X.S. Xie, C.C. Richardson, A.M. van Oijen, “DNA primase acts as a molecular brake in DNA replication.” Nature 439, 621 (2006)
3. Jong-Bong. Lee, D. Konovalov, R. B. Meyer, “Textural transformations in islands on free-standing Smectic C* liquid crystal films.” Phys. Rev. E 73, 051705 (2006)
2. R. B. Meyer, D. Konovalov, I. Kraus, Jong-Bong Lee, “Equilibrium size and textures of islands in free standing Smectic C* films.” Mol. Cryst. Liq. Cryst. 364 123 (2001)
1. J.-H. Lee, J.-H. Kim, Jong-Bong Lee, S.-D. Lee, “Effect of the external twist on molecular orientation in antiferroelectric liquid crystals.” Mol. Cryst. Liq. Cryst. 301, 209 (1997